This directory contains contrib code for web-based applications.
This category might overlap with others, since a web-based app might
include a toolkit program written in C or Fortran or Perl.  But in
general, this directory is for CGI scripts and programs and Java
code.

Note that installation instructions for the web apps are contained
in their header comments.


Contents of this directory:
===========================

   Example Web Apps:
   =================
   cansmi.cgi - Canonicalize SMILES w/ options
   depict.cgi	- Depict SMILES CGI web app (no DayPerl)
   depict-file.cgi - Depict from file
   daybase.cgi	- Simple Thor/Merlin CGI (no DayPerl)
   daytops.cgi - Interface to PrintPackage (PS output)
   depictmatch.cgi - Depict and show SMARTS match
   mol2smi.cgi - Convert Molfile to SMILES/TDTs
   pcmodels.cgi - PCModels (Clogp/CMR) interface
   react.cgi - Apply reaction transforms
   rubicon.cgi - Rubicon interface
   stigmata - Stigmata, structural commonalities analyzer
   thor.cgi - simple read/write Thor interface

   Perl packages:
   ==============
   CGIPARSE.pm	- Perl package for parsing CGI data
   CGI_Lite.pm	- Perl CPAN package for handling files, etc.
   DU_LIB.pm	- Some Daylight-user non-toolkit utility subroutines
   DU_TDT2HTML.pm	- TDT to HTML converter
   DU_TLIB.pm	- Some Daylight-user toolkit utility subroutines
   DU_JAVA.pm   - Code to include JavaGRINS

   Perl utilities:
   ===============
   tdt2html.pl	- Converts TDTs to HTML w/ smi2gif depictions
   tdt2smi.pl	- TDTs to SMILES
   tdt2fdt.pl   - Converts TDTs to FDT for daytops.cgi (Treetops)

   Misc:
   =====
   daylight.sh	- Sample DY_ environment script
   smirks_examples.txt - Helpfile for react.cgi