dayblob results using merlinserver test suite


The database:

Database name:wdi93
SMILES rooted datatrees:37037

The machines:

"Chal"SGI Challenge L, 2x100MHz MIPS R4400, IRIX 5.1.1.2
"Sun1K"Sun SparcServer-1000, 8x50MHz, SuperSparc CPUs, SunOS 5.3
"Sun60"Sun Ultra-60, 2x360MHz SuperSparc CPUs, SunOS 5.6

The tests:

1aStringsearch in SMILES for "As" (93 hits)
1bStringsearch in SMILES for "Au" (42 hits)
1cRegular expression search in SMILES for "A[su]" (134 hits)
1dSuperstructure search for [As] (93 hits)
1eSuperstructure search for [Au] (42 hits)
2aSuperstructure search for N#CN=CN (44 hits)
2bSuperstructure search + sort for N#CN=CN (44 hits)
3aSuperstructure search for dopamine (1086 hits)
3bSuperstructure search + sort for dopamine (1086 hits)
3cSuperstructure SMARTS-search for dopamine (1086 hits)
4aSuperstructure search for cefalosporin-g1 (243 hits)
4bSuperstructure search + sort for cefalosporin-g1 (243 hits)
4cSuperstructure SMARTS-search for cefalosporin-g1 (243 hits)
5aSimilarity search (high, T > 0.75) for cefedrolor (35 hits)
5bSimilarity sort for cefedrolor
5cSuperstructure search for cefedrolor (1 hit)
5dSubstructure search for cefedrolor (70 hits)
6aASCII sort of SMILES
6bLength-sort of SMILES
6cNumerical sort of molecular weight
6dNumerical value search for molecular weight 300-310 (1136 hits)

Results:

Test
No.
Machine:
Program:
Chal
merlin
Sun1K
merlin
Sun60
merlin
Sun60
dayblob
check
count
% mer
Chal
% mer
Sun60
1aAs/string 1.1301.4550.251~~~~
1bAu/string 1.1301.4550.246~~~~
1cA[su]/regexp 0.5720.5580.089~~~~
1d[As]/supsel 0.7210.7440.132 0.92 93128697
1e[Au]/supsel 0.6070.5400.067 0.21 4235313
2aN#CN=CN/supsel 0.5880.5140.045 0.19 4432422
2bN#CN=CN/supselsort 0.5940.5420.047~~~~
3adopa/supsel 6.1356.2621.790 2.08 108638130
3bdopa/supselsort 6.2456.3901.855~~~~
3cdopa/smartsel 6.1216.2561.839 2.07 108634116
4acefa_g1/supsel 2.4872.4460.801 0.68 2432785
4ccefa_g1/smartsel 2.4782.4430.797 0.69 2432887
4bcefa_g1/supselsort 2.5152.5060.795~~~~
5acefedro/simsel 0.6391.0340.049 0.08 168*13163
5bcefedro/simsort 1.7742.9290.137 6.24 320373524555
5ccefedro/supselsort 0.6410.4110.030~~~~
5dcefedro/embedsel 5.8795.4381.598~~~~
6asmi-ascii-sort 7.0876.4770.754~~~~
6bsmi-len-sort 0.5540.4880.101~~~~
6cAMW-num-sort 0.6020.6450.122~~~~
6dAMW-range-select 0.1080.1100.015~~~~

Notes


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